Plant Physiology

Tentative Schedule

Biology 438 Spring 2012
MWF 10-11 AM Lecture Science 134
R 11:00-2:00 PM Laboratory Science 315
R 2:00-5:00 PM Laboratory Science 315
Hotlines: 860-465-4444 or 800-578-1449

Dr. Ross Koning
MWF 9-10 AM Science 356
F 11-1 Science 356
Cell: 860-933-2712
koning∂easternct⋅edu

Date Lecture Topic Thursday Laboratory Resources
Wed-Jan 18 Introduction: Science No Quiz This Week
Statistics
S12 Leaf Data
Fri-Jan 20 Why Study Plants?
Mon-Jan 23 Basic Statistics Due: Statistics Worksheet
Quiz 1
Morphology
Tissue Culture
 
Wed-Jan 25 Basic Botany
Fri-Jan 27 Basic Botany (continued)
Mon-Jan 30 More Basic Botany Due: Plant Morphology Amp. Abs.
Quiz 2
Plant Anatomy
Leaf Cross Section
Stem Cross Section
Root Cross Section
Wed-Feb 1 Finish Basic Botany
Fri-Feb 3 Basic Plant Cytology 1
Mon-Feb 6 Basic Plant Cytology 2 Due: Plant Anatomy Amp. Abs.
Quiz 3
Cytology
Sample Abstract
Wed-Feb 8 Basic Plant Cytology 2
Fri-Feb 10 Cytoskeleton
Cell Cycle
Mon-Feb 13 Enzyme Basics Due: Plant Cytology Amp. Abs.
Quiz 4
Enzyme Kinetics
 
Wed-Feb 15 Enzyme Kinetics
Fri-Feb 17 President's Vacation
Mon-Feb 20 President's Vacation Quiz 5
(Finish Lecture Material)
Excel: NonLinear Regression
Nonlinear Regression Pointers
Wed-Feb 22 Mineral Requirements
Fri-Feb 24 Finish Minerals
Water and Water Movement
Mon-Feb 27 Finish Water Movement
Osmosis
Quiz 6
Mineral Nutrition
Diffusion
Periodic Chart
Betacyanin Structure
Wed-Feb 29 Sadie Hawkins Day
Root intake
Fri-Mar 2 Transpiration
Mon-Mar 5 Solutes Due: Diffusion Amp. Abs.
Quiz 7
Osmosis
 
Wed-Mar 7 Finish Solutes
Fri-Mar 9 Due: Osmosis
Translocation
Mon-Mar 12 Light and Chlorophyll Due: Enzyme lab report
Due: Osmosis Amp. Abs.
Quiz 8
Replenish Mineral Elements
Transpiration
 
Wed-Mar 14 Light Reactions
Fri-Mar 16 Finish: Light Reactions
Mon-Mar 19 Spring Break
Wed-Mar 21
Fri-Mar 23
Date Lecture Topic Thursday Laboratory Resources
Mon-Mar 26 Intro: Calvin Cycle Due: Transpiration Amp. Abs.
Quiz 9
Planting Seeds, etc.
Finish Mineral Nutrition
Model System: Happy Bird
 
Wed-Mar 28 Finish: Calvin Cycle
Fri-Mar 30 Photorespiration
Mon-Apr 2 C4 and CAM Cycles
Due: Happy Bird Handout Only
Due: Mineral Nutrition Amp. Abs.
Quiz 10
General Introduction
Photon Flux Density
CO2 Electrode Alternative
Treat: Pea Stem Growth
PSN Calculations
More Cuvette Data
Wed-Apr 4 Finish: C4 and CAM Cycles
Plant Respiration
Fri-Apr 6 Day of Reflection
Mon-Apr 9 Continue: Plant Respiration
Due: Photosynthesis Amp. Abs.
Quiz 11
Treat Root Initiation
Treat Bean Branch Initiation
Plant Beans for Leaf Abscission
 
Wed-Apr 11 Finish Respiration
Pentose Phosphate Shunt
Fri-Apr 13 Phytochrome
Mon-Apr 16 Finish Phytochrome
Quiz 12
Plant Spelt "Wheat Berries" Seed
Finish: Pea Stem Growth
Finish: Root Initiation
Finish: Bean Branch Initiation
Measure: Light and Stem Growth
Horm/Gen Stem Growth Plot
Root Initiation Plot
Root Internode Plot
Bean Branch: Auxin
Bean Branch: Cytokinin
Wed-Apr 18 Photoperiodism
Fri-Apr 20 Blue-Light Responses
Mon-Apr 23 Set up Seed Germination
Finish: Blue-Light Responses
Due: Pea Stem Growth Amp. Abs.
Due: Root Initiation Amp. Abs.
Due: Bean Branch Amp. Abs.
Quiz 13
Plant Tissue Culture Outcome
Treat: Leaf Abscission
Treat: Leaf Senescence
Measure: Seed Germination
Tissue Culture Plot
pH Plot
Sucrose Plot
GA Dose Plot
Hormone Dose Plot
Wed-Apr 25 Auxins
Fri-Apr 27 More About Auxin, Gibberellins
Mon-Apr 30 Share data for Leaf Senescence
Cytokinins
Due: Tissue Culture Amp. Abs.
Due: Leaf Senescence Amp. Abs.
Due: Light and Growth Amp. Abs.
Quiz 14
Finish: Seed Germination
Finish: Leaf Abscission
Senescence Plots
Seed Germination Z-test Sheet
Abscission Plots
Wed-May 2 Ethylene, Abscisic Acid
Mon-May 7 Due: Seed Germination Worksheet Only   Due: Leaf Abscission Amp. Abs.
9-11 AM Comprehensive Final Exam in Plant Physiology in Science 315

OBJECTIVES:
This course satisfies one of the six upper-level course requirements for the biology major. It is designed to provide you with comprehensive exposure to the subject of plant physiology. You will learn about the structure and function of plants throughout their development from seeds through reproduction. Considerable experience in chemistry is assumed, as is recall from BIO 220 (Cell Biology). Our discussions and exercises will cover from the biochemical level through the organismal level. The laboratory exercises will complement the lectures. If you are a person who has over-specialized in molecular biology, zoology or human biology, this course will expand your horizons significantly. As a study of producers, this course will examine those organisms so important because of their position at the energy and elemental intake portion of the energy pyramid and the food web! Upon these organisms depends human survival.

ELECTRONIC MATERIALS:
You will find lecture notes, lab exercises, due dates, and other course materials available for you on the World Wide Web at this address: http://plantphys.info/ There may be a required username:___________________ and password:___________________ to access some of these materials as they are copyrighted and therefore cannot be given out over the internet beyond the members of our class.

TEXT:
Several texts in Plant Physiology are published...I have chosen none of them because they are too deep (expecting too much background undergrads do not have yet) or are extremely expensive or both. If you want a finished, published text, older editions (except the first edition) are probably just fine for this course, but here are references for latest edition choices:

L. Taiz and E. Zeiger. 2007. Plant Physiology. 4th ed. Sinauer Associates, Inc. This is the deep, standard text at $90.

W. G. Hopkins and N. P. A. Huner. 2009. Introduction to Plant Physiology. 4th ed. John Wiley & Sons, Inc. While more introductory, it costs $110.

B. B. Buchanan, W. Gruissem, and R. L. Jones. 2000. Biochemistry and Molecular Biology of Plants. John Wiley & Sons, Inc. This book is VERY deep in biochemistry and extremely expensive at $130 for a new paperback copy of an aging edition! However, it is very comprehensive!

LAB MANUAL:
Separate exercise worksheets will be handed out for your use. You should obtain a three-ring binder to hold them together as a laboratory manual. The exercises will overlap in time and due-dates, so having them all together and with you in class each day is critical! The binder will help with that. I know spiral books are all the rage, but a 3-ring binder is vastly superior for this course! Put your name inside your binder so when it is lost you have at least some hope of recovery!

LAB KIT:
Large three-ring binder with zipper pouch containing: Small Scissors, Metric Rule, Fine Forceps, Pencil (mechanical preferred), Eraser, Simple Calculator (+−×÷=). Former students suggest getting some color pencils for your zipper pouch. A small pocket knife or whatever you like to clean under your fingernails would be good to have too. You absolutely need to have a USB=flash=jump drive. All of these are available inexpensively at retail stores just about anywhere. The alternative to the USB drive is to bring your own laptop with Microsoft Excel installed to some lab sessions (not inexpensive but maybe most useful to you)! Lab worksheets even partially completed in ink will receive a 10% penalty...use pencil only...keep it in your zipper pouch so it is ready for use!

GRADING:
Your final course grade will be based on weekly quizzes, laboratory worksheets and amplified abstracts, a lab report, and a final exam as described below.

QUIZZES:
There will be a quiz given each week for the first few minutes of laboratory time. Emphasis for each quiz will be whatever has been covered since the previous quiz in either lecture or laboratory, but questions could be on anything previously in the course and/or synthesis of separate ideas presented in the course. Each quiz may consist of a variety of question types; be prepared for all! You will be given one week after each quiz is returned in which to challenge, in writing, the grading/scoring of that quiz. THERE WILL BE NO MAKE-UP QUIZZES! Being tardy for the quiz will shorten your time to work on the quiz...when all students who are on-time to class are finished, all quizzes will be collected promptly. You be prompt too! Quizzes are collectively worth 35% of the course grade.

LAB EXERCISES:
Each laboratory exercise will be inspired by a handout. You will work with one or more partner(s). Each person will fill out and hand in their own handout and/or write a one-page abstract about the project amplified by attached notes, drawings, graphs, calculations, etc., depending on the exercise. Electronic files are not acceptable documentation of your laboratory exercises. The worksheet and/or amplified abstract will be due one week after the exercise is officially completed and the due date will be posted on the official syllabus page for this course on the website. The papers are due at the beginning of the class period on the indicated date. Papers received after the starting time of the class by even 1 minute will be considered one-day late. Late papers will receive a penalty of 10% per day late but after the first graded exercise paper is returned to one of your classmates, your late submission is no longer acceptable and earns a grade of 0%! I grade as promptly as possible, so you need to be prompt too! The laboratory exercises are collectively worth 35% of the course grade.

LABORATORY REPORT:
The format of the lab report must follow the standard guidelines in the departmental style manual (Pechenik). The laboratory report must be handed in as a hard-copy; electronic files are not acceptable. The laboratory report is due no later than 2 PM on Thursday, March 15, 2010; failure to hand in this report by this deadline will result in a course grade of F, regardless of the other grades earned in the course. The laboratory report is worth 10% of the course grade. You should not let this assignment go to the end of the semester without any attention on your part! This needs to be an upper-level report showing your experience in our core writing courses.

COMPREHENSIVE FINAL EXAM:
You will take a comprehensive final exam in this course at the appropriate time on the official final exam schedule. The exam covers all material in this course. Studying the quizzes will assist you in preparing for the final. But you will also want to be prepared to answer broader questions, perhaps even integrative essay questions that go beyond weekly coverage. The Final Exam constitutes 20% of the course grade.

PARTICIPATION:
Participation in this laboratory course is essential but, due to its subjective nature, is not given grading credit in a specific numerical sense. However, should your course grade come near a grading border, my sense of your participation in this course will be used as leverage into or barrier from the next-higher grade. Being on-time to all classes, having all materials needed for class, turning in assignments on time or early, being thorough in your laboratory work, being attentive in both lab and lecture classes, working efficiently and cooperatively with lab partners, asking pertinent questions, having answers to my questions in lectures, etc. are all good ways to impress me about your commitment to learning about plant physiology. If you are a person who procrastinates, who does only the minimum, who is tardy with everything, who complains about academic workloads, who watches lab partners doing the work, who sleeps in class, or who can not or will not do simple math, well...you will get what you earn...and only what you earn.

If you are a commuter to our campus, you should remember that parking is often hard to find and leave extra time for the search, and for the walking that may be required once you are parked. Also, you need to think about alternatives should you have vehicle problems. Is there a family member who can give you a ride? Do you have contacts for other ECSU students from your town with whom you might carpool? Are your tires good enough for the driving conditions that New England weather will present? Commuters need to be courageous about driving in snow, on glare ice, in torrential rain, etc.

ACCOMMODATIONS:
If you believe you will need special accommodations for this class, please contact the Office of AccessAbility Services at (860) 465-5573 as soon as possible. I cannot provide accommodations until I have received a formal accommodation letter from the Office of AccessAbility Services.

CHEATING:
In many exercises you will work with laboratory partners and will share the data obtained. Your calculations, your reports, abstracts, and quizzes must, however, be done ON YOUR OWN. Plagiarism will not be tolerated and severe penalties will be invoked. Copying will not be tolerated. Extra credit work will not be given to any one for any reason!